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Table 5 Comparison of published gene models to SnowyOwl predictions

From: SnowyOwl: accurate prediction of fungal genes by using RNA-Seq and homology information to select among ab initio models

  A. niger P. chrysosporium
Similarity to SnowyOwl Number Structural defects* Conflicts with RNA-Seq† Number Structural defects* Conflicts with RNA-Seq†
Identical 6868 0 0 1396 0 0
Identical except at start 1249 58 (4.6%) 438 (35.1%) 864 97 (11.2%) 216 (27.0%)
Different, > 5% overlap 2755 322 (11.7%) 1246 (45.2%) 6936 1924 (27.7%) 3750 (54.1%)
Different, < 5% overlap 1038 393 (37.9%) 376 (36.2%) 852 275 (32.3%) 442 (51.9%)
Total 11910 773 (6.5%) 2060 (17.3%) 10048 2296 (22.9%) 4408 (43.9%)
  1. *Invalid coding sequences, short predicted proteins, introns with nonstandard donor-acceptor pairs.
  2. †Predicted introns not matching read splice sites, models with discontinuous read coverage.