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Figure 1 | BMC Bioinformatics

Figure 1

From: A spatial simulation approach to account for protein structure when identifying non-random somatic mutations

Figure 1

Statistic construction. In this example, we consider r{3,9} and up to 3 potential mutational hotspots in the protein. First, μ and σ are calculated over each column. Next, we normalize each entry in the column by calculating Z i , s , r = X i , s , r μ s , r σ s , r . We then take the maximum over each row to get Z0,…,Z1000. The percentage of times Z0Z i , where i{1,…,1000}, is the p-value of our observed statistic Z0. Note that if Z0 is greater than Z i for all 1000 simulations, we report a p-value of <1.00 E-03.

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