BorreliaBase: a phylogeny-centered browser of Borrelia genomes

Di, Lia; Pagan, Pedro E; Packer, Daniel; Martin, Che L; Akther, Saymon; Ramrattan, Girish; Mongodin, Emmanuel F; Fraser, Claire M; Schutzer, Steven E; Luft, Benjamin J; Casjens, Sherwood R; Qiu, Wei-Gang

doi:10.1186/1471-2105-15-233

BMC Bioinformatics

Table 1 Complete and draft Borrelia genomes ^a

From: BorreliaBase: a phylogeny-centered browser of Borrelia genomes

Strain	Species	Geographic origin	Biological source^b	Sequencing status	NCBI Accession^c	Genome report
Lyme borreliosis (LB) Group ( *B. burgdorferi* sensu lato)
B31	Bb sensu stricto	New York, US	I. scapularis	Complete	PRJNA57581	[3, 4]
64b	Bb sensu stricto	New York, US	Human	Draft	PRJNA55067	[13]
ZS7	Bb sensu stricto	Germany	I. ricinus	Draft	PRJNA59429	[13]
JD1	Bb sensu stricto	Massachusetts, US	I. scapularis	Complete	PRJNA161197	[13]
CA-11.2A	Bb sensu stricto	California, US	I. pacificus	Draft	PRJNA55063	[13]
CA382	Bb sensu stricto	California, US	N.A.	Complete (chromosome only)	PRJNA214794	N.A.
CA8	Bb sensu stricto	California, US	N.A.	Draft	PRJNA201452	N.A.
N40	Bb sensu stricto	New York, US	I. scapularis	Complete	PRJNA161241	[13]
72a	Bb sensu stricto	New York, US	Human	Draft	PRJNA54937	[13]
156a	Bb sensu stricto	New York, US	Human	Draft	PRJNA54817	[13]
WI91-23	Bb sensu stricto	Wisconsin, US	Bird	Draft	PRJNA55061	[13]
118a	Bb sensu stricto	New York, US	Human	Draft	PRJNA54935	[13]
297	Bb sensu stricto	Connecticut, US	Human	Complete (plasmids only)	PRJNA178345	[13]
29805	Bb sensu stricto	Connecticut, US	I. scapularis	Draft	PRJNA55055	[13]
Bol26	Bb sensu stricto	Italy	I. ricinus	Draft	PRJNA54819	[13]
94a	Bb sensu stricto	New York, US	Human	Draft	PRJNA54933	[13]
SV1	B. finlandensis	Finland	I. ricinus	Draft	PRJNA55065	[11]
DN127	B. bissettii	California, US	I. pacificus	Draft	PRJNA71231	[12]
PKo	B. afzelii	Germany	Human	Draft	PRJNA159867	[10]
ACA-1	B. afzelii	Sweden	Human	Draft	PRJNA54821	[10]
PBi	B. bavariensis	Germany	Human	Complete (chromosome, cp26, and lp54 only)	PRJNA58125	[8]
PBr	B. garinii	Denmark	Human	Draft	PRJNA55059	[10]
Far04	B. garinii	Denmark	Bird	Draft	PRJNA55149	[10]
VS116	B. valaisiana	Switzerland	I. ricinus	Draft	PRJNA54823	[12]
A14S	B. spielmani	The Netherlands	I. ricinus	Draft	PRJNA55069	[12]
BgVir	B. garinii	Russia	I. persulcatus	Draft	PRJNA162165	[26]
NMJW1	B. garinii	China	I. persulcatus	Complete	PRJNA177081	[27]
HLJ01	B. afzelii	China	Human	Complete	PRJNA177930	[28]
Relapsing fever (RF) Group
A1	B. recurrentis	Ethiopia	Human	Complete	PRJNA58793	[6]
Ly	B. duttonii	Tanzania	Human	Complete	PRJNA58791	[6]
Achema	B. crocidurae	Mauritania	O. sonrai	Draft	PRJNA162335	[5]
DAH	B. hermsii	Washington, US	Human	Draft	PRJNA59225	N.A.
HR1	B. parkeri	California, US	O. parkeri	Complete	PRJNA231102	[29]
91E135	B. turicatae	Texas, US	O. turicatae	Complete (chromosome only)	PRJNA58311	N.A.
LB-2001	B. miyamotoi	Northeast US	I. scapularis	Complete (chromosome only)	PRJNA215233	[7]

^aSources: PATRIC (http://wwww.patricbrc.org) and GOLD (http://genomesonline.org/), accessed on December 21, 2013. Sequencing status: “Complete”, gaps closed; “Draft”, gaps not closed. “N.A.”, information not available.
^bI. scapularis, I. ricinus, I. persulcatus: hard-bodied Ixodes tick species. O. sonrai, O. turicatae, O. parkeri: soft-bodied Ornithodoros tick species.
^cNCBI BioProject (http://www.ncbi.nlm.nih.gov/bioproject) RefSeq Genome Accession.

Back to article page

ISSN: 1471-2105

Contact us

General enquiries: journalsubmissions@springernature.com