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Table 2 Statistical evaluation of motifs identified by MoTeX-II using a synthetic dataset

From: MoTeX-II: structured MoTif eXtraction from large-scale datasets

Parameters

Implanted

Identified

Extracted

Ranking of

 

motifs

implanted motifs

motifs

implanted motif

<(3,0)[2,2](5,0),7>

1

1

5

1/1

<(5,0)[2,2](3,0),7>

1

1

6

1/1

<(3,0)[2,2](6,1),7>

1

1

2,475

1/1

<(6,1)[2,2](3,0),7>

1

1

2,753

1/1

<(5,1)[2,2](6,1),7>

1

1

17,118

1/1

<(6,1)[2,2](5,1),7>

1

1

17,135

1/1

  1. Ranking stands for the z-score ranking of the identified implanted motif based on support/weighted support.
  2. The statistical evaluation of the motifs identified by MoTeX-II using a synthetic dataset. The basic input dataset consists of 1,062 upstream sequences of Bacillus subtilis genes of total size 240 KB.
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BMC Bioinformatics

ISSN: 1471-2105

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