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Table 3 Elapsed-time comparison of RISOTTO, EXMOTIF, and MoTeX-II using a small-scale real dataset

From: MoTeX-II: structured MoTif eXtraction from large-scale datasets

Parameters

RISOTTO

EXMOTIF

MoTeX-II-CPU

MoTeX-II-OMP -t 48

<(8,1)[2,3](8,1),7>

286s

898s

1,885s

46s

<(8,1)[2,3](8,1),15>

217s

626s

1,860s

48s

<(8,1)[2,3](9,2),7>

2,086s

2,253s

1,871s

49s

<(8,1)[2,3](9,2),15>

1,103s

2,222s

1,860s

48s

<(9,2)[2,3](8,1),7>

4,868s

2,222s

1,868s

48s

<(9,2)[2,3](8,1),15>

4,279s

2,197s

1,856s

49s

<(9,2)[2,3](9,2),7>

39,488s

22,862s

1,871s

47s

<(9,2)[2,3](9,2),15>

21,274s

22,739s

1,865s

47s

  1. Elapsed-time comparison of RISOTTO, EXMOTIF, and MoTeX-II using a small-scale real dataset. The input dataset consists of 250 upstream sequences of Homo sapiens genes of total size 250 KB.
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BMC Bioinformatics

ISSN: 1471-2105

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