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Table 5 Elapsed-time comparison of RISOTTO, EXMOTIF, and MoTeX-II using a large-scale real dataset

From: MoTeX-II: structured MoTif eXtraction from large-scale datasets

Parameters

RISOTTO

EXMOTIF

MoTeX-II-MPI -np 1056

<(8,1)[2,3](9,2)[3,5](10,3),5>

*

*

12,068s

<(8,1)[2,3](10,3)[3,5](9,2),5>

*

*

12,371s

<(9,2)[2,3](8,1)[3,5](10,3),5>

*

*

11,953s

<(9,2)[2,3](10,3)[3,5](8,1),5>

*

*

12,095s

<(10,3)[2,3](8,1)[3,5](9,2),5>

*

*

12,035s

<(10,3)[2,3](9,2)[3,5](8,1),5>

*

*

11,729s

  1. *The programme did not terminate after one week of execution.
  2. Elapsed-time comparison of RISOTTO, EXMOTIF, and MoTeX-II using the full upstream Homo Sapiens genes dataset. The input dataset consists of 19,535 upstream sequences of total size 22.2 MB.
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BMC Bioinformatics

ISSN: 1471-2105

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