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Table 6 NPA leading nodes of the xenobiotic network for the comparison current smoker vs. never smoker, all are positive

From: Quantification of biological network perturbations for mechanistic insight and diagnostics using two-layer causal models

Rank

GSE7895

GSE19667

1

taof(AHR) (+)

taof(AHR) (+)

2

Reactive Oxygen Species (+)

Diesel exhaust particles (+)

3

Diesel exhaust particles (+)

Reactive Oxygen Species (+)

4

taof(NFE2L2) (+)

NFE2L2 (+)

5

NFE2L2 (+)

taof(NFE2L2) (+)

6

8-Methyl-IQX (+)

8-Methyl-IQX (+)

7

AHR (+)

Polycyclic

  

Aromatic Hydrocarbons (+)

8

oxof(CYP2E1) (+)

catof(CYP1B1) (+)

9

Polycyclic

CYP1A1 (+)

 

Aromatic Hydrocarbons (+)

 

10

catof(CYP1B1) (+)

catof(CYP1A2) (+)

11

catof(CYP1A2) (+)

catof(CYP1A1) (+)

12

CYP1A1 (+)

Particulate Matter (+)

13

catof(CYP1A1) (+)

Soot (+)

14

Soot (+)

AHR (+)

15

 

oxof(CYP2E1) (+)

  1. The nodes also extracted by Nearest Shrunken Centroids are shown in bold.