Rapid screening for phenotype-genotype associations by linear transformations of genomic evaluations

BMC Bioinformatics

Table 1 SNP selected by smallest p-value per chromosome

SNP-name	Chromosome	Position Mb	-log₁₀(p-value)	$\|\hat{g}\|$
ALGA0104402	6	136.08	8.02	0.77
H3GA0010564	3	119.34	5.95	0.48
ALGA0032063	5	61.37	3.78	0.42
ALGA0081287	14	125.98	3.28	0.33
DRGA0011971	13	10.47	3.12	0.36
MARC0022304	9	94.99	3.12	0.42
ALGA0106422	16	111.82	2.90	0.28
ASGA0010464	2	62.15	2.79	0.30
ALGA0111088	8	88.01	2.77	0.48
ASGA0078865	18	10.72	2.70	0.49
ALGA0010607	1	302.88	2.69	0.43
MARC0082230	12	6.14	2.59	0.31
ALGA0045724	7	129.47	2.57	0.41
ASGA0092331	4	138.29	2.52	0.27
ASGA0070227	15	111.82	2.48	0.29
ASGA0077393	17	55.27	2.43	0.32
ASGA0045992	10	7.00	2.42	0.30
ALGA0060793	11	10.50	2.38	0.34

SNP name = SNP marker name, Position Mb = Marker physical position in Mega-Bases, −log₁₀(p-value) = −Logarithm in base 10 of the smallest p-value, $|\hat{g}|$ = absolute value of the SNP effect estimated for the trait 13 week tenth rib backfat (mm).

ISSN: 1471-2105