Table 1 The mean SP and TC scores of the pairwise alignments generated by HHsearch1.2, HHsuite and HMMsato on the CASP9 test data set consisting of 1,138 pairs of proteins
Method | Mean SP score | Mean TC score |
|---|---|---|
HHsearch (without secondary structure information) | 48.69 | 48.34 |
HHsearch (with secondary structure information) | 50.00 | 49.65 |
HHsuite (without secondary structure information) | 48.47 | 48.12 |
HHsuite (with secondary structure information) | 49.76 | 49.41 |
HMMsato | 50.39 | 50.02 |