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Table 2 The average TM-scores and GDT-TS scores of the 3D models generated from the 1,127 pairwise test alignments produced by HHsearch1.2, HHsuite and HMMsato

From: Enhancing HMM-based protein profile-profile alignment with structural features and evolutionary coupling information

Method

Average TM-score

Average GDT- TS score

HHsearch (without secondary structure information)

0.527

0.459

HHsearch (with secondary structure information)

0.548

0.479

HHsuite (without secondary structure information)

0.525

0.459

HHsuite (with secondary structure information)

0.543

0.476

HMMsato

0.555

0.483

  1. Bold numbers are the highest scores.