Enhancing HMM-based protein profile-profile alignment with structural features and evolutionary coupling information

Table 4 The SP scores and TC scores with different values of w _sa using HMMsato on the training data

w _sa	0	0.1	0.2	0.3	0.4	0.5	0.6	0.61	0.62
SP score	40.89	41.58	41.82	41.92	42.06	42.18	42.23	42.18	42.20
TC score	40.58	41.25	41.49	41.58	41.73	41.85	41.90	41.85	41.87
0.63	0.64	0.65	0.66	0.67	0.68	0.69	0.7	0.71	0.72
42.19	42.22	42.22	42.23	42.23	42.25	42.24	42.29	42.29	42.31 ^*
41.86	41.89	41.89	41.90	41.90	41.92	41.91	41.96	41.96	41.98*
0.73	0.74	0.75	0.76	0.77	0.78	0.79	0.8	0.9	1
42.27	42.29	42.27	42.28	42.27	42.28	42.27	42.25	42.24	42.20
41.94	41.96	41.94	41.95	41.94	41.94	41.94	41.91	41.91	41.87

Bold denotes the two best scores, and an extra superscript of star denotes the highest score.

ISSN: 1471-2105