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Table 1 Elapsed time for the LCA with BLASTN-NT

From: ELM: enhanced lowest common ancestor based method for detecting a pathogenic virus from a large sequence dataset

Dataset No.

# of reads

# of BLASTN hits

CPU time

BLAST

LCA

1

4,449,766

4,424,602

12,179 h

96 m

2

4,146,547

2,754,210

8,704 h

22 m

3

12,393,506

10,674,129

23,313 h

82 m

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BMC Bioinformatics

ISSN: 1471-2105

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