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Table 4 Detection of abundant virus genera in fecal viromes of piglets using ELM with BLASTN viruses

From: ELM: enhanced lowest common ancestor based method for detecting a pathogenic virus from a large sequence dataset

Dataset No.

ELM with BLASTN viruses (# of reads)

LCA with BLAST-NT (# of reads)

4

Kobuvirusa (6,449)

Kobuvirus (6,446)

5

Dependovirusa (759),Bocavirus (133)

Dependovirus (754), Bocavirus (528), Chimpanzee stool associated circular ssDNA virusb (106)

  1. aThe genus includes descendant taxa IF >2.54. bAccording to the literature [18], this virus is the novel pig stool-associated single-stranded DNA virus, which is not assigned to a specific genus.
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BMC Bioinformatics

ISSN: 1471-2105

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