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Table 2 Results of inferring the experimentally perturbed miRNAs using different methods and different networks

From: Inferring the perturbed microRNA regulatory networks from gene expression data using a network propagation based method

Datasets GSEA GR.GSEA NP-method
HTRI HTRI10%add HTRI10%del STRING
GSE33420.CRC.mir-143 a1 (*) 1 (*) 1 (*) 1 (*) 1 (*) 1 (*)
GSE18625.CRC.mir-145 26 (0.033) 19 (0.035) 1 (*) 2 (*) 1 (*) 1 (*)
GSE7754.CRC.mir-34a 98 (0.672) 80 (0.796) 45 (0.484) 40 (0.539) 47 (0.503) 122 (0.99)
GSE16568.OVCA.mir-22 5 (*) 5 (*) 1 (*) 1 (*) 1 (*) 1 (*)
GSE16569.OVCA.mir-30a/30d 77 (0.004) 66 (0.245) 18 (0.011) 30 (0.037) 15 (0.01) 46 (0.192)
GSE16572.OVCA.mir-182 15 (*) 24 (0.044) 5 (0.008) 3 (0.005) 4 (0.007) 9 (0.03)
  1. aPutative rank of the perturbed miRNA according to the normalized score (p-value of the miRNA); *< 0.001.