Table 2 Results of inferring the experimentally perturbed miRNAs using different methods and different networks
Datasets | GSEA | GR.GSEA | NP-method | |||
|---|---|---|---|---|---|---|
HTRI | HTRI10%add | HTRI10%del | STRING | |||
GSE33420.CRC.mir-143 | a1 (*) | 1 (*) | 1 (*) | 1 (*) | 1 (*) | 1 (*) |
GSE18625.CRC.mir-145 | 26 (0.033) | 19 (0.035) | 1 (*) | 2 (*) | 1 (*) | 1 (*) |
GSE7754.CRC.mir-34a | 98 (0.672) | 80 (0.796) | 45 (0.484) | 40 (0.539) | 47 (0.503) | 122 (0.99) |
GSE16568.OVCA.mir-22 | 5 (*) | 5 (*) | 1 (*) | 1 (*) | 1 (*) | 1 (*) |
GSE16569.OVCA.mir-30a/30d | 77 (0.004) | 66 (0.245) | 18 (0.011) | 30 (0.037) | 15 (0.01) | 46 (0.192) |
GSE16572.OVCA.mir-182 | 15 (*) | 24 (0.044) | 5 (0.008) | 3 (0.005) | 4 (0.007) | 9 (0.03) |