Algorithm
|
PhylDiag (without sbs of 2 hps)
|
ADHoRe
|
---|
distance
|
ED
|
CD
|
DPD
|
MD
|
DPD
|
---|
coverage
|
98.71%
|
98.74%
|
97.02%
|
98.55%
|
96.55%
|
N50
|
44.69
|
46.62
|
32.66
|
37.33
|
31.71
|
Analysis without gene orientations
|
sensitivity
|
94.99%
|
95.06%
|
92.26%
|
94.32%
|
91.68%
|
specificity
|
99.92%
|
99.85%
|
99.90%
|
99.98%
|
99.83%
|
Analysis with gene orientations
|
sensitivity
|
94.20%
|
94.26%
|
91.56%
|
93.54%
|
88.56%
|
specificity
|
99.08%
|
99.01%
|
99.13%
|
99.15%
|
96.43%
|
- Since ADHoRe only returns sbs containing at least 3 hps, we only consider PhylDiag’s sbs containing at least 3 hps.