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Table 1 Results of synteny block identification with PhylDiag and i-ADHoRe3.0.2a, both using a gap max = 5

From: PhylDiag: identifying complex synteny blocks that include tandem duplications using phylogenetic gene trees

Algorithm PhylDiag (without sbs of 2 hps) ADHoRe
distance ED CD DPD MD DPD
coverage 98.71% 98.74% 97.02% 98.55% 96.55%
N50 44.69 46.62 32.66 37.33 31.71
Analysis without gene orientations
sensitivity 94.99% 95.06% 92.26% 94.32% 91.68%
specificity 99.92% 99.85% 99.90% 99.98% 99.83%
Analysis with gene orientations
sensitivity 94.20% 94.26% 91.56% 93.54% 88.56%
specificity 99.08% 99.01% 99.13% 99.15% 96.43%
  1. Since ADHoRe only returns sbs containing at least 3 hps, we only consider PhylDiag’s sbs containing at least 3 hps.