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Table 1 Results of synteny block identification with PhylDiag and i-ADHoRe3.0.2a, both using a gap max = 5

From: PhylDiag: identifying complex synteny blocks that include tandem duplications using phylogenetic gene trees

Algorithm

PhylDiag (without sbs of 2 hps)

ADHoRe

distance

ED

CD

DPD

MD

DPD

coverage

98.71%

98.74%

97.02%

98.55%

96.55%

N50

44.69

46.62

32.66

37.33

31.71

Analysis without gene orientations

sensitivity

94.99%

95.06%

92.26%

94.32%

91.68%

specificity

99.92%

99.85%

99.90%

99.98%

99.83%

Analysis with gene orientations

sensitivity

94.20%

94.26%

91.56%

93.54%

88.56%

specificity

99.08%

99.01%

99.13%

99.15%

96.43%

  1. Since ADHoRe only returns sbs containing at least 3 hps, we only consider PhylDiag’s sbs containing at least 3 hps.