Table 2 Statistics for cell-type trees on H3K4me3 data
From: Study of cell differentiation by phylogenetic analysis using histone modification data
hESC | Epithelial | Fibroblast | Blood | Astrocytes | Myocytes | Endothelial | Skeletal muscle | SR | PD | |
|---|---|---|---|---|---|---|---|---|---|---|
(5) | (8) | (16) | (2) | (2) | (1) | (2) | (1) | (%) | ||
WM (one replicate)-ENCODE | 5,0 | 6,1 | 8,4 | 2,0 | 1,1 | 1,0 | 1,1 | 1,0 | 0.93 | 3.20 |
OM (one replicate)-ENCODE | 5,0 | 4,1 | 6,3 | 2,0 | 2,0 | 1,0 | 1,1 | 1,0 | 0.92 | 3.94 |
OM (one replicate)-ENCODE-MP | 5,0 | 4,2 | 6,4 | 2,0 | 1,1 | 1,0 | 1,1 | 1,0 | 0.63 | - |
WM (one replicate)-MACS2 | 5,0 | 4,2 | 14,1 | 2,0 | 2,0 | 1,0 | 1,1 | 1,0 | 0.88 | 5.51 |
OM (one replicate)-MACS2 | 5,0 | 4,2 | 13,3 | 2,0 | 2,0 | 1,0 | 1,1 | 1,0 | 0.89 | 4.84 |
WM (all replicates)-ENCODE | 5,0 | 6,1 | 11,2 | 2,0 | 1,1 | 1,0 | 1,1 | 1,0 | 0.84 | 3.30 |
OM (all replicates)-ENCODE | 5,0 | 4,2 | 9,4 | 2,0 | 2,0 | 1,0 | 1,1 | 1,0 | 0.78 | 3.88 |
WM (all replicates)-MACS2 | 5,0 | 4,2 | 14,1 | 2,0 | 2,0 | 1,0 | 1,1 | 1,0 | 0.63 | 5.31 |
OM (all replicates)-MACS2 | 5,0 | 4,2 | 15,1 | 2,0 | 2,0 | 1,0 | 1,1 | 1,0 | 0.65 | 5.18 |
WM (all replicates)-TP-ENCODE | 5,0 | 6,1 | 7,4 | 2,0 | 1,1 | 1,0 | 1,1 | 1,0 | 0.81 | 3.73 |
OM (all replicates)-TP-ENCODE | 5,0 | 4,3 | 8,5 | 2,0 | 2,0 | 1,0 | 1,1 | 1,0 | 0.74 | 3.98 |
OM (profile)-ENCODE | 5,0 | 4,3 | 12,2 | 2,0 | 2,0 | 1,0 | 1,1 | 1,0 | 0.90 | 4.05 |