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Table 3 Analysis on paths for various days of ES cells

From: Study of cell differentiation by phylogenetic analysis using histone modification data

Row no.

D0

D2

D5

D9

D14

H3K4me3

H3K27me3

      

(total)

(total)

1

0

0

0

0

1

1075

3496

2

0

0

0

1

0

342

743

3

0

0

0

1

1

387

599

4

0

0

1

0

0

331

1459

5

0

0

1

0

1

15

97

6

0

0

1

1

0

40

112

7

0

0

1

1

1

247

461

8

0

1

0

0

0

1278

1919

9

0

1

0

0

1

14

22

10

0

1

0

1

0

9

57

11

0

1

0

1

1

30

82

12

0

1

1

0

0

60

74

13

0

1

1

0

1

5

11

14

0

1

1

1

0

9

34

15

0

1

1

1

1

147

253

16

1

0

0

0

0

450

641

17

1

0

0

0

1

11

9

18

1

0

0

1

0

11

5

19

1

0

0

1

1

14

3

20

1

0

1

0

0

24

40

21

1

0

1

0

1

6

5

22

1

0

1

1

0

10

5

23

1

0

1

1

1

101

81

24

1

1

0

0

0

630

1140

25

1

1

0

0

1

17

21

26

1

1

0

1

0

11

26

27

1

1

0

1

1

47

71

28

1

1

1

0

0

309

548

29

1

1

1

0

1

54

52

30

1

1

1

1

0

263

335

31

1

1

1

1

1

25112

10926

  1. Table shows the number of different types of changes across various days of ES cells. Dx means day x of ES cell type. 1 and 0 represents the presence or absence of a peak as defined by the overlap representation in one region of the genome. The number of such 1-0 patterns are counted and presented in the last column.