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Table 1 Computing time (seconds) using GREML_CE and GREML_QM for simulated datasets 1

From: GVCBLUP: a computer package for genomic prediction and variance component estimation of additive and dominance effects

 

q = 1000, m = 3000 (Dataset_1)

q = 3000, m = 1000 (Dataset_2)

 

GREML_CE

GREML_QM

GREML_CE

GREML_QM

Time for SNP input, Ag and Dg

1

1

1

1

Time per iteration

~0.2

6

3

~0.6

Number of iteration

10

10

7

7

Total time

5

69

32

6

  1. 1The two programs were run on a personal computer (PC) with Intel Core i7-2600 (4 cores) of 3.40 GHz and memory of 8 Gb.