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Table 2 Co-occurring gene sets identified by applying CoMDP to the lung cancer data

From: Discovery of co-occurring driver pathways in cancer

k

Gene set 1

Gene set 2

p 1

p 2

n 1

n 2

r 1,2

p 1,2

4

ATM, TP53

KRAS, EGFR

0.0121

<0.0001

76

90

0.3833

0.0129

5

ATM, TP53

STK11, KRAS, EGFR

0.0125

<0.0001

76

110

0.4091

0.0220

 

STK11, ATM,

KRAS, NTRK3, EGFR,

      

10

TP53, PAK4

GNAS, EPHA3, NRAS

0.0379

<0.0001

98

108

0.5489

0.0001

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BMC Bioinformatics

ISSN: 1471-2105

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