Table 1 Comparison of average time cost and memory usage between SC and ms
From: A new method for modeling coalescent processes with recombination
Sample size | Region (L) | ρ(4N e Lr p ) | SC | ms |
|---|---|---|---|---|
20 | 10 Mb | 1000 | 45 s (14 MB) | 13 s (63 MB) |
10 Mb | 10,000 | 3 h 43 min 22 s (210 MB) | 2 h 3 min 53 s (344 MB) | |
100 Mb | 1000 | 57 s (14 MB) | N/A | |
100 Mb | 10,000 | 4 h 30 min 18 s (238 MB) | N/A | |
100 | 10 Mb | 1000 | 1 min 57 s (19 MB) | 23 s (148 MB) |
10 Mb | 10,000 | 7 h 11 min 34 s (281 MB) | N/A | |
100 Mb | 1000 | 2 min 11 s (20 MB) | N/A | |
100 Mb | 10,000 | 7 h 13 min 3 s (289 MB) | N/A | |
1000 | 1 Mb | 1000 | 3 min 13 s (26 MB) | 12 s (215 MB) |
10 Mb | 3 min 20 s (26 MB) | N/A |