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Table 1 Classification results on PlaneDimers and the KL-subset, where the β -distributions according to which the synthetic scores were drawn are defined by Equations 7, 8, 9 and 10

From: CRF-based models of protein surfaces improve protein-protein interaction site predictions

PlaneDimers

Score precisionς

0 .8

0 .9

1 .0

1 .1

1.2

Surface AUC ratio Γ

1.084

1.091

1.093

1.089

1.093

Kl-subset

Signal precision ς

0.8

0.9

1.0

1.1

1.2

Surface AUC ratio Γ

1.032

1.039

1.045

1.045

1.050

  1. Depending on the variances determined by ς, the enhancer increases the AUC referred to the protein surface by 8.4%-9.3%. on PlaneDimers, and by 3.2%-5.0% on the KL-subset.
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BMC Bioinformatics

ISSN: 1471-2105

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