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Table 1 Snapshot of information obtained upon searching the CSR database with a protein or gene accession number

From: Non-synonymous variations in cancer and their effects on the human proteome: workflow for NGS data biocuration and proteome-wide analysis of TCGA data

RefSeq nucleotide AC

Pos1

Chg2

Protein

Pos3

Chg

UniProt AC4

Pos5

Sample

Type

Library

NM_000059.3

1092

A|C

NP_000050.2

289

N|H

P51587

289

TCGA-BH-A0BW-01A-11D-A10Y-09

Breast Cancer Case

WXS6

NM_000059.3

1205

C|A

NP_000050.2

326

S|R

P51587

326

TCGA-BH-A0AZ-01A-21D-A12Q-09

Breast Cancer Case

WXS

NM_000059.3

1341

A|C

NP_000050.2

372

N|H

P51587

372

TCGA-AC-A2FF-01A-11D-A17D-09

Breast Cancer Case

WXS

  1. 1Position in RefSeq nucleotide entry.
  2. 2Nucleotide change.
  3. 3Position in RefSeq protein entry.
  4. 4UniProtKB/Swiss-Prot acceesion.
  5. 5Position in UniProtKB/Swiss-Prot protein entry.
  6. 6Whole exome sequencing.
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BMC Bioinformatics

ISSN: 1471-2105

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