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Table 1 Snapshot of information obtained upon searching the CSR database with a protein or gene accession number

From: Non-synonymous variations in cancer and their effects on the human proteome: workflow for NGS data biocuration and proteome-wide analysis of TCGA data

RefSeq nucleotide AC Pos1 Chg2 Protein Pos3 Chg UniProt AC4 Pos5 Sample Type Library
NM_000059.3 1092 A|C NP_000050.2 289 N|H P51587 289 TCGA-BH-A0BW-01A-11D-A10Y-09 Breast Cancer Case WXS6
NM_000059.3 1205 C|A NP_000050.2 326 S|R P51587 326 TCGA-BH-A0AZ-01A-21D-A12Q-09 Breast Cancer Case WXS
NM_000059.3 1341 A|C NP_000050.2 372 N|H P51587 372 TCGA-AC-A2FF-01A-11D-A17D-09 Breast Cancer Case WXS
  1. 1Position in RefSeq nucleotide entry.
  2. 2Nucleotide change.
  3. 3Position in RefSeq protein entry.
  4. 4UniProtKB/Swiss-Prot acceesion.
  5. 5Position in UniProtKB/Swiss-Prot protein entry.
  6. 6Whole exome sequencing.
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BMC Bioinformatics

ISSN: 1471-2105

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