Figure 4
From: HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data
Summary of peak calling for H3K27me3 ChIP-Seq. H3K27me3 ChIP-Seq data were downloaded from the ENCODE project (see implementation) and duplicates were filtered out by Picard. Each cell line has two biological replicates (r1 and r2). SICER software was used to call peaks using both duplicate-filtered reads and reads without duplicate removal.