HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data

BMC Bioinformatics

Table 3 RUNX1 peaks from BWA and Novoalign mapped reads

Peaks were called by MACS (−f BAM -g hs --keep-dup all -q 0.01), after removal of duplicates by Picard. Motif was identified by MEME suite.

ISSN: 1471-2105