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Table 3 RUNX1 peaks from BWA and Novoalign mapped reads

From: HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data

Type BWA Novoalign
Overlapped peaks 818 809
Unique peaks w/ motif 85 86
Unique peaks w/o motif 28 138
Total peaks 931 1033
  1. Peaks were called by MACS (−f BAM -g hs --keep-dup all -q 0.01), after removal of duplicates by Picard. Motif was identified by MEME suite.
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BMC Bioinformatics

ISSN: 1471-2105

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