Table 10 Runtime for scaffolders on Rhodobacter sphaeroides with GAGE data
From: BESST - Efficient scaffolding of large fragmented assemblies
Runtime (hh:mm:ss) | ||||
|---|---|---|---|---|
Assembly | BESST | OPERA | SOPRA | SSPACE |
ABySS | 00:01:22 | 00:12:38 | 01:17:49 | 00:00:40 |
Allpaths-LG | 00:00:32 | 00:01:13 | 00:10:35 | 00:00:27 |
Bambus2 | 00:00:33 | 00:01:38 | 00:10:42 | 00:00:25 |
CABOG | 00:00:35 | 00:00:59 | 00:11:13 | 00:00:27 |
MSR-CA | 00:00:38 | 00:01:12 | 00:18:10 | 00:00:29 |
SGA | 00:01:45 | 00:01:35 | 01:30:44 | 00:00:45 |
SOAPdenovo | 00:00:33 | 00:03:48 | 00:18:08 | 00:00:27 |
Velvet | 00:00:49 | 00:01:16 | 00:36:54 | 00:00:27 |