Skip to main content

Table 11 Runtime for scaffolders on Hs14 with GAGE data (upper bound time requirement was set to 48 hours)

From: BESST - Efficient scaffolding of large fragmented assemblies

  Runtime (hh:mm:ss)
Assembly BESST OPERA SOPRA SSPACE
ABySS 00:19:37 00:58:22 - 00:32:55
Allpaths-LG 00:05:06 00:53:24 22:02:09 00:12:55
Bambus2 00:07:43 01:18:06 - 00:14:26
CABOG 00:04:16 00:16:16 11:50:23 00:08:33
MSR-CA 00:11:22 - - 00:15:38
SGA 00:53:42 00:23:18 16:15:22 00:38:42
SOAPdenovo 00:07:50 - - 00:10:46
Velvet 00:10:07 - 01:27:16 00:15:35