Table 11 Runtime for scaffolders on Hs14 with GAGE data (upper bound time requirement was set to 48 hours)
From: BESST - Efficient scaffolding of large fragmented assemblies
Runtime (hh:mm:ss) | ||||
|---|---|---|---|---|
Assembly | BESST | OPERA | SOPRA | SSPACE |
ABySS | 00:19:37 | 00:58:22 | - | 00:32:55 |
Allpaths-LG | 00:05:06 | 00:53:24 | 22:02:09 | 00:12:55 |
Bambus2 | 00:07:43 | 01:18:06 | - | 00:14:26 |
CABOG | 00:04:16 | 00:16:16 | 11:50:23 | 00:08:33 |
MSR-CA | 00:11:22 | - | - | 00:15:38 |
SGA | 00:53:42 | 00:23:18 | 16:15:22 | 00:38:42 |
SOAPdenovo | 00:07:50 | - | - | 00:10:46 |
Velvet | 00:10:07 | - | 01:27:16 | 00:15:35 |