Skip to main content

Table 3 The performance SVM based models developed on HL16 dataset using composition and binary pattern

From: Designing of peptides with desired half-life in intestine-like environment

Input features Residues in peptides Total attributes R R2 MAE
Amino acid composition All residues 20 0.91 0.82 0.18
5 N-terminal 0.57 0.32 0.23
10 N-terminal 0.77 0.60 0.24
5 C-terminal 0.37 0.13 0.27
10 C-terminal 0.81 0.65 0.24
Binary pattern All residues 320 0.13 0.01 0.18
5 N-terminal 100 0.17 0.02 0.20
5 C-terminal 100 0.03 -0.002 0.18
10 N-terminal 200 0.22 0.02 0.18
10 C-terminal 200 0.09 -0.002 0.18
Dipeptide composition All residues 400 0.90 0.39 0.23
Tripeptide composition All residues 8000 0.90 0.31 0.24