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Table 1 Selected triggers

From: A generalizable NLP framework for fast development of pattern-based biomedical relation extraction systems

Events

Verb

Derivation

Gene_expression

express

-ion, over-, co-, non-, re-

 

produce

-ion, non-, co-

Transcription

express 1

See above

 

initiate

-tion

 

produce 1

See above

 

transcribe

-tion, -tional, -tionally

Protein_catabolism

cleave

-age

 

degrade

-tion, -tive

 

proteolyse

-sis, -tic, -tically

Phosphorylation

phosphorylate

-ion, under-, hyper-

Localization

accumulate

-ation

 

appear

-ance

 

detect

 
 

export

 
 

express 2

See above

 

import

 
 

localize

-ation, co-, re-

 

locate

-ion, re-, trans-

 

migrate

co-

 

mobilize

-ation, im-

 

release

 
 

secrete

-ion

 

transport

 

Binding

associate

-ion

 

bind

DNA-

 

engage

-ment

 

interact

-ion

 

ligate

-ion, co-

 

link

cross-

 

oligomerize

-ation

 

recruit

-ment

 

immunoprecipitate

co-

  1. 1. This predication is always used together with “mRNA”.
  2. 2. This predication is always used together with “surface”.
  3. The Derivation column shows affix used to derive other forms of triggers. Singular, past tense, and gerund forms are not shown.