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Table 7 Results on the (W)hole, (A)bstract, and (F)ull paper collections from the testing set of BioNLP-ST 2011 GE task 1

From: A generalizable NLP framework for fast development of pattern-based biomedical relation extraction systems

Event class

Whole

Abstract

Full

 

P

R

F

P

R

F

P

R

F

Simple event

92.59

59.80

72.66

92.2

56.09

69.75

93.52

71.17

80.83

 Gene_expression

91.89

62.18

74.17

91.29

58.03

70.96

93.15

72.86

81.76

 Transcription

93.10

46.55

62.07

92.86

47.45

62.80

94.12

43.24

59.26

 Protein_catabolism

100.00

66.67

80.00

100.00

64.29

78.26

100.00

100.00

100.00

 Phosphorylation

92.52

73.51

81.93

91.51

71.85

80.50

95.12

78.00

85.71

 Localization

96.67

45.55

61.92

97.33

41.95

58.63

93.33

82.35

87.50

Binding

89.58

40.28

55.57

89.20

35.40

50.70

90.10

51.12

65.20

Total

91.97

54.55

68.48

91.68

50.89

65.45

92.64

64.83

76.28

  1. Performance is reported in terms of (P)recision/(R)ecall/(F)-score.