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Table 7 Results on the (W)hole, (A)bstract, and (F)ull paper collections from the testing set of BioNLP-ST 2011 GE task 1

From: A generalizable NLP framework for fast development of pattern-based biomedical relation extraction systems

Event class Whole Abstract Full
  P R F P R F P R F
Simple event 92.59 59.80 72.66 92.2 56.09 69.75 93.52 71.17 80.83
 Gene_expression 91.89 62.18 74.17 91.29 58.03 70.96 93.15 72.86 81.76
 Transcription 93.10 46.55 62.07 92.86 47.45 62.80 94.12 43.24 59.26
 Protein_catabolism 100.00 66.67 80.00 100.00 64.29 78.26 100.00 100.00 100.00
 Phosphorylation 92.52 73.51 81.93 91.51 71.85 80.50 95.12 78.00 85.71
 Localization 96.67 45.55 61.92 97.33 41.95 58.63 93.33 82.35 87.50
Binding 89.58 40.28 55.57 89.20 35.40 50.70 90.10 51.12 65.20
Total 91.97 54.55 68.48 91.68 50.89 65.45 92.64 64.83 76.28
  1. Performance is reported in terms of (P)recision/(R)ecall/(F)-score.