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Figure 4 | BMC Bioinformatics

Figure 4

From: Critical assessment of coalescent simulators in modeling recombination hotspots in genomic sequences

Figure 4

The linkage disequilibrium block structure generated by Haploview for the 216-kb human HLA class II region (total 263 SNPs) based on 100 haplotypes reconstructed by PHASE v2.1 (top panel), LDhat 2.2 rhomap estimation results of five runs for detecting recombination hotspots (middle panel; five different colors denote these different runs), and cross-over hotspot peaks revealed by the likelihood ratio graph generated by sequenceLDhot (bottom panel).

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