Table 3 Average (50 replicates) execution time (standard deviation) of simulating 5-Mb sequence with recombination hotspots (hh:mm:ss)*
From: Critical assessment of coalescent simulators in modeling recombination hotspots in genomic sequences
Number of hotspots | N | ms | msHOT | MacsCS | Simcoal2* | Fastsimcoal |
|---|---|---|---|---|---|---|
0 | 100 | 1:48 (0:03) | 1:49 (0:03) | 0:17 (0:02) | 1:08:23 (4:22) | 0:03 (4×10-3) |
500 | --- | --- | 0:48 (0:03) | 1:17:02 (4:41) | 0:16 (0:02) | |
1,000 | --- | --- | 1:39 (0:07) | 1:20:57 (7:23) | 0:40 (0:02) | |
10,000 | --- | --- | 29:45 (1:22) | 1:55:01 (8:21) | 12:36 (0:14) | |
2 | 100 | --- | 1:36:18 (8:41) | 0:17 (0:03) | 1:16:16 (4:30) | 0:03 (4×10-3) |
500 | --- | 1:54:09 (6:20) | 0:51 (0:08) | 1:17:29 (6:23) | 0:17 (0:03) | |
1,000 | --- | 1:59:32 (7:30) | 1:32 (0:10) | 1:25:50 (7:31) | 0:40 (0:03) | |
10,000 | --- | 2:02:28 (10:52) | 30:02 (3:04) | 2:08:31 (7:24) | 13:01 (0:10) | |
5 | 100 | --- | 3:08:45 (13:11) | 0:19 (0:3) | 1:09:38 (7:10) | 0:04 (0:01) |
500 | --- | 3:23:29 (16:08) | 0:49 (0:07) | 1:10:59 (10:03) | 0:17 (0:02) | |
1,000 | --- | 3:31:39 (17:14) | 1:34 (0:12) | 1:24:10 (9:37) | 0:41 (0:05) | |
10,000 | --- | 4:12:07 (20:06) | 36:50 (5:47) | 1:57:03 (14:20) | 13:17 (0:12) |