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Table 4 Concordance of SNP array and Mercury data

From: Launching genomics into the cloud: deployment of Mercury, a next generation sequence analysis pipeline

Replicate PASS ALL
1 1897 1906
2 1900 1906
3 1898 1904
4 1895 1905
5 1899 1907
6 1904 1907
7 1902 1905
Average 1899.28 1905.71
Average % 98.56 98.89
  1. For each exome technical replicate, we report the number of passing SNPs found by Mercury and the total number of SNPs (passing and not passing) in the VCF that overlap the SNP array design. The SNP array contains 1,927 sites that overlap the exome capture region.
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