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Table 4 Concordance of SNP array and Mercury data

From: Launching genomics into the cloud: deployment of Mercury, a next generation sequence analysis pipeline

Replicate

PASS

ALL

1

1897

1906

2

1900

1906

3

1898

1904

4

1895

1905

5

1899

1907

6

1904

1907

7

1902

1905

Average

1899.28

1905.71

Average %

98.56

98.89

  1. For each exome technical replicate, we report the number of passing SNPs found by Mercury and the total number of SNPs (passing and not passing) in the VCF that overlap the SNP array design. The SNP array contains 1,927 sites that overlap the exome capture region.
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BMC Bioinformatics

ISSN: 1471-2105

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