From: Personalized Oncology Suite: integrating next-generation sequencing data and whole-slide bioimages
Application | Edit | Clinical | TNM | Sequencing | Vis. | Bioimages | Public | Ref. |
---|---|---|---|---|---|---|---|---|
BioIMAX | ☑ | ☒ | ☒ | ☒ | ☒ | Whole-slide | ☒ | [3] |
Bisque | ☑ | ☒ | ☒ | ☒ | ☒ | Whole-slide | ☒ | [4] |
Galaxy LIMS | ☑ | ☒ | ☒ | ☑ | ☒ | ☒ | ☒ | [5] |
NG6 | ☒ | ☒ | ☒ | Raw 454 and HiSeq | ☒ | ☒ | ☒ | [6] |
NGS tools | ☑ | ☒ | ☒ | Raw Illumina | ☒ | ☒ | DAS [7] | [8] |
OMERO | ☑ | ☒ | ☒ | ☒ | ☒ | ☒ | ☒ | [9] |
ONCO-i2b2 | ☒ | ☑ | ☑ | ☒ | ☒ | ☒ | SNOMED | [10] |
openBIS | ☑ | ☒ | ☒ | Raw Illumina | ☒ | ☒ | ☒ | [11] |
Taverna | ☒ | ☒ | ☒ | ☑ | ☒ | ☒ | ☑ | [12] |
POS | ☑ | ☑ | ☑ | vcf Files | ☑ | Whole-slide | COSMIC [13] | - |