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Figure 1 | BMC Bioinformatics

Figure 1

From: ROTAS: a rotamer-dependent, atomic statistical potential for assessment and prediction of protein structures

Figure 1

Description of the interaction between atom types i and j . Total eight parameters are used to specify the interaction between two atoms. Here, d ij , θ i , ϕ i are the spherical coordinates of atom j with respect to the local frame of atom i, and ω is a torsional angle around d ij , and R i and R j represent the rotameric state of residues. The rotameric states are determined by side-chain dihedral angles.

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BMC Bioinformatics

ISSN: 1471-2105

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