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Table 2 Performance on native structure recognition

From: ROTAS: a rotamer-dependent, atomic statistical potential for assessment and prediction of protein structures

Decoy set Targets dDFIRE OPUS_PSP RWplus GOAP ROTAS
4state_reduced 7 7 (−4.15) 7 (−4.49) 6 (−3.50) 7 (−4.67) 7 (−5.07)
fisa 4 3 (−3.80) 3 (−4.24) 3 (−4.78) 3 (−3.98) 3 (−4.83)
lmds 10 6 (−2.44) 8 (−5.63) 7 (−1.03) 8 (−4.34) 8 (−5.47)
fisa_casp3 5 4 (−4.73) 5 (−6.33) 4 (−5.17) 4 (−6.65) 4 (−7.48)
hg_structal 29 15 (−1.25) 18 (−2.28) 12 (−1.70) 20 (−2.46) 22 (−2.51)
ig_structal 61 26 (−0.82) 22 (−1.13) 0 (1.11) 44 (−1.91) 46 (−2.25)
ig_structal_hires 20 16 (−2.00) 15 (−1.79) 0 (0.31) 18 (−2.68) 18 (−3.11)
lattice_ssfit 8 8 (−10.08) 8 (−6.56) 8 (−8.77) 8 (−7.94) 8 (−8.90)
moulder 20 18 (−2.74) 19 (−4.83) 19 (−2.84) 19 (−3.53) 19 (−3.76)
rosetta 59 12 (−0.43) 40 (−3.62) 20 (−1.21) 43 (−3.66) 48 (−4.18)
I-TASSER 56 48 (−5.03) 49 (−5.40) 56 (−5.77) 48 (−5.81) 49 (−7.31)
Amber99 47 27 (−3.42) 20 (−2.58) 16 (−2.38) 38 (−4.38) 37 (−4.48)
CASP5-8 143 98 (−1.34) 134 (−2.45) 106 (−1.67) 139 (−2.26) 140 (−2.43)
Total 469 288 (−2.16) 348 (−3.08) 257 (−1.98) 399 (−3.35) 409 (−3.80)
  1. Numbers outside the parentheses are the numbers of correctly recognized native structures and the ones in the parentheses are the average Z-scores of the native structures. The best scores are highlighted in bold type.