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Table 2 Performances on transcripts derived from PacBio and 454

From: PLEK: a tool for predicting long non-coding RNAs and messenger RNAs based on an improved k-mer scheme

Dataset

Tool

Sensitivity

Specificity

PPV

NPV

Accuracy

MCF-7 (PacBio)

PLEK

0.947

0.958

0.998

0.407

0.947

CPC

0.999

0.190

0.970

0.958

0.970

CNCI

0.918

0.787

0.991

0.269

0.913

HelaS3 (454)

PLEK

0.955

0.925

0.999

0.262

0.954

CPC

0.999

0.472

0.991

0.926

0.990

CNCI

0.939

0.811

0.997

0.189

0.937

  1. Bold face type indicates the best performances (sensitivity, specificity, PPV, NPV, accuracy) among PLEK, CPC and CNCI. Italic face type indicates the worst specificity and NPV among these tools.
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BMC Bioinformatics

ISSN: 1471-2105

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