Table 1 The TCR-CD1d-Ag and TCR-MR1-Ag test cases
From: Modeling T cell receptor recognition of CD1-lipid and MR1-metabolite complexes
PDB code | Â | Â | Â | Â | Â | ||
|---|---|---|---|---|---|---|---|
Complex | TCR | Ligand | TCR name | TCR type | Ligand name | Binding RMSD1, Ã… | Difficulty2 |
3HUJ [15] | 2EYS [16] | 1ZT4 [17] | NKT15 | Type I NKT | CD1d-α-GalCer | 1.04 | Rigid |
4EI5 [5] | 4EI6 [5] | 2AKR [18] | XV19 | Type II NKT | CD1d-sulfatide | 1.08 | Medium |
4LHU [9] | 4LFH [9] | 1ZT4 [17] | 9C2 | γδ | CD1d-α-GalCer | 0.90 | Rigid |
4MNG [10] | 4MNH [10] | 4MQ7 [10] | DP10.7 | γδ | CD1d-sulfatide | 0.68 | Rigid |
4L4T [8]3 | 4DZB [19]3 | 4GUP [3] | MAIT | MAIT | MR1-6FP | 0.87 | Rigid |