TY - JOUR AU - Folkard, M. AU - Prise, K. M. AU - Grime, G. AU - Kirkby, K. AU - Vojnovic, B. PY - 2010 DA - 2010// TI - The use of microbeams to investigate radiation damage in living cells JO - ApplRadiat Isot VL - 67 UR - https://doi.org/10.1016/j.apradiso.2008.06.015 DO - 10.1016/j.apradiso.2008.06.015 ID - Folkard2010 ER - TY - JOUR AU - Selinummi, J. AU - Ruusuvuori, P. AU - Podolsky, I. AU - Ozinsky, A. AU - Gold, E. AU - Yli-Harja, O. AU - Aderem, A. AU - Shmulevich, I. PY - 2009 DA - 2009// TI - Bright field microscopy as an alternative to whole cell fluorescence in automated analysis of macrophage images JO - PLoS ONE VL - 4 UR - https://doi.org/10.1371/journal.pone.0007497 DO - 10.1371/journal.pone.0007497 ID - Selinummi2009 ER - TY - CHAP AU - Ali, R. AU - Gooding, M. AU - Szilágyi, T. AU - Vojnovic, B. AU - Christlieb, M. AU - Brady, M. PY - 2011 DA - 2011// TI - Automatic segmentation of adherent biological cell boundaries and nuclei from brightfield microscopy images BT - Mach Vision Appl, ID - Ali2011 ER - TY - JOUR AU - Adiga, P. S. U. AU - Chaudhuri, B. B. PY - 2001 DA - 2001// TI - An efficient method based on watershed and rule-based merging for segmentation of 3-D histo-pathological images JO - Pattern Recognit 34 VL - 34 UR - https://doi.org/10.1016/S0031-3203(00)00076-5 DO - 10.1016/S0031-3203(00)00076-5 ID - Adiga2001 ER - TY - JOUR AU - Lin, G. AU - Chawla, M. K. AU - Olson, K. AU - Guzowski, J. F. AU - Roysam, B. PY - 2005 DA - 2005// TI - Hierarchical, model-based merging of multiple fragments for improved three-dimensional segmentation of nuclei JO - J Cytometry VL - 63 UR - https://doi.org/10.1002/cyto.a.20099 DO - 10.1002/cyto.a.20099 ID - Lin2005 ER - TY - JOUR AU - Chen, X. AU - Zhou, X. AU - Wong, S. T. C. PY - 2006 DA - 2006// TI - Automated segmentation, classification, and tracking of.pdf JO - IEEE Trans Biomed Eng VL - 53 UR - https://doi.org/10.1109/TBME.2006.870201 DO - 10.1109/TBME.2006.870201 ID - Chen2006 ER - TY - CHAP AU - Harder, N. AU - Neumann, B. AU - Held, M. AU - Liebel, U. AU - Erfle, H. AU - Ellenberg, J. AU - Eils, R. AU - Rohr, K. PY - 2006 DA - 2006// TI - Automated recognition of mitotic patterns in fluorescence microscopy images of human cells BT - 3rd IEEE International Symposium on Biomedical Imaging: Nano to Macro ID - Harder2006 ER - TY - CHAP AU - Ali, R. AU - Gooding, M. AU - Christlieb, M. AU - Brady, M. AU - Feng, F. R. S. PY - 2008 DA - 2008// TI - Advanced phase-based segmentation of multiple cells from brightfield microscopy images BT - 5th IEEE International Symposium on Biomedical Imaging ID - Ali2008 ER - TY - JOUR AU - Genovesio, A. AU - Liedl, T. AU - Emiliani, V. AU - Parak, W. J. AU - Coppey-Moisan, M. AU - Olivo-Marin, J. C. PY - 2006 DA - 2006// TI - Multiple particle tracking in 3-D+t microscopy: method and application to the tracking of endocytosed quantum dots JO - IEEE Trans Image Process: Publ IEEE Signal Process Soc VL - 15 UR - https://doi.org/10.1109/TIP.2006.872323 DO - 10.1109/TIP.2006.872323 ID - Genovesio2006 ER - TY - JOUR AU - Zhou, X. AU - Li, F. AU - Yan, J. AU - Wong, S. T. C. PY - 2010 DA - 2010// TI - A novel cell segmentation method and cell phase identification using Markov Model JO - IEEE Trans Inf Technol Biomed VL - 13 UR - https://doi.org/10.1109/TITB.2008.2007098 DO - 10.1109/TITB.2008.2007098 ID - Zhou2010 ER - TY - JOUR AU - Kovalev, V. AU - Harder, N. AU - Neumann, B. AU - Held, M. AU - Liebel, U. AU - Erfle, H. AU - Ellenberg, J. AU - Eils, R. AU - Rohr, K. PY - 2006 DA - 2006// TI - Feature selection for evaluating fluorescence microscopy images in genome-wide cell screens JO - 2006 IEEE Comput Soc Conf Comput Vis Pattern Recognit VL - 1 ID - Kovalev2006 ER - TY - JOUR AU - De Solorzano, C. O. AU - Malladi, R. AU - Lockett, S. J. PY - 2001 DA - 2001// TI - Segmentation of nuclei and cells using membrane related protein markers JO - J Microscopy VL - 201 UR - https://doi.org/10.1046/j.1365-2818.2001.00854.x DO - 10.1046/j.1365-2818.2001.00854.x ID - De Solorzano2001 ER - TY - JOUR AU - Selinummi, J. AU - Ruusuvuori, P. AU - Podolsky, I. AU - Ozinsky, A. AU - Gold, E. AU - Yli-Harja, O. AU - Aderem, A. AU - Shmulevich, I. PY - 2009 DA - 2009// TI - Bright field microscopy as an alternative to whole cell fluorescence in automated analysis of macrophage images JO - PloS one VL - 4 UR - https://doi.org/10.1371/journal.pone.0007497 DO - 10.1371/journal.pone.0007497 ID - Selinummi2009 ER - TY - JOUR AU - Lamprecht, M. R. AU - Clarke, C. AU - Kang, I. H. AU - Friman, O. AU - Chang, J. H. AU - Moffat, J. AU - Golland, P. AU - Sabatini, D. M. PY - 2006 DA - 2006// TI - CellProfiler: image analysis software for identifying and quantifying cell phenotypes JO - Genome Biol VL - 7 UR - https://doi.org/10.1186/gb-2006-7-10-r100 DO - 10.1186/gb-2006-7-10-r100 ID - Lamprecht2006 ER - TY - JOUR AU - Gooding, M. J. AU - Kennedy, S. AU - Noble, J. A. PY - 2008 DA - 2008// TI - Volume segmentation and reconstruction from freehand three-dimensional ultrasound data with application to ovarian follicle measurement JO - Ultrasound Med Biol VL - 34 UR - https://doi.org/10.1016/j.ultrasmedbio.2007.07.023 DO - 10.1016/j.ultrasmedbio.2007.07.023 ID - Gooding2008 ER - TY - JOUR AU - Shannon, C. E. PY - 2001 DA - 2001// TI - A mathematical theory of communication JO - SIGMOBILE Mob Comput Commun Rev VL - 5 UR - https://doi.org/10.1145/584091.584093 DO - 10.1145/584091.584093 ID - Shannon2001 ER - TY - JOUR AU - Otsu, N. PY - 1979 DA - 1979// TI - A threshold selection method from gray-level histograms JO - IEEE Trans Syst VL - C ID - Otsu1979 ER - TY - JOUR AU - Andrey, N. PY - 1965 DA - 1965// TI - Three approaches to the quantitative definition of information JO - Problems Inf Transm VL - 1 ID - Andrey1965 ER - TY - CHAP AU - Galas, D. J. AU - Nykter, M. AU - Carter, G. W. AU - Price, N. D. AU - Shmulevich, I. AU - Member, S. PY - 2010 DA - 2010// BT - Biological information as set-based complexity ID - Galas2010 ER - TY - JOUR AU - Flann, N. S. AU - Mohamadlou, H. AU - Podgorski, G. J. PY - 2013 DA - 2013// TI - Kolmogorov complexity of epithelial pattern formation: the role of regulatory network configuration JO - Biosystems VL - 112 UR - https://doi.org/10.1016/j.biosystems.2013.03.005 DO - 10.1016/j.biosystems.2013.03.005 ID - Flann2013 ER - TY - CHAP AU - Mäki-Marttunen, T. AU - Kesseli, J. AU - Kauffman, S. AU - Yli-Harja, O. AU - Nykter, M. PY - 2011 DA - 2011// TI - Of the complexity of Boolean network state trajectories BT - Proceedings of the Eighth International Workshop on Computational Systems Biology, WCSB PB - Zurich CY - Switzerland ID - Mäki-Marttunen2011 ER - TY - JOUR AU - Sakhanenko, N. A. AU - Galas, D. J. PY - 2011 DA - 2011// TI - Complexity of networks I: The set-complexity of binary graphs JO - Complexity VL - 17 UR - https://doi.org/10.1002/cplx.20382 DO - 10.1002/cplx.20382 ID - Sakhanenko2011 ER - TY - CHAP AU - Chen, X. AU - Francia, B. AU - Li, M. AU - Mckinnon, B. AU - Seker, A. PY - 2004 DA - 2004// TI - Shared information and program plagiarism detection BT - IEEE Transactions on Information Theory ID - Chen2004 ER - TY - JOUR AU - Cilibrasi, R. AU - Vitanyi, P. M. B. PY - 2005 DA - 2005// TI - Clustering by compression JO - IEEE Trans Inf Theory VL - 51 UR - https://doi.org/10.1109/TIT.2005.844059 DO - 10.1109/TIT.2005.844059 ID - Cilibrasi2005 ER - TY - CHAP AU - Li, M. AU - Li, X. AU - Li, X. AU - Ma, B. AU - Vitanyi, P. PY - 2003 DA - 2003// TI - The similarity metric BT - IEEE Transactions on Information Theory ID - Li2003 ER - TY - JOUR AU - Cebrián, M. C. AU - Alfonseca, M. AU - Ortega, A. PY - 2005 DA - 2005// TI - Common pitfalls using normalized compression distance: what to watch out for in a compressor JO - Commun Inf Syst VL - 5 ID - Cebrián2005 ER - TY - CHAP AU - Mortensen, J. AU - Wu, J. AU - Furst, J. AU - Rogers, J. AU - Raicu, D. ED - Ślezak, D. ED - Pal, S. ED - Kang, B. H. ED - Gu, J. ED - Kuroda, H. ED - Kim, T. h. PY - 2009 DA - 2009// TI - Effect of image linearization on normalized compression distance BT - Signal Processing, Image Processing and Pattern Recognition, Volume 61 of Communications in Computer and Information Science PB - Springer CY - Berlin, Heidelberg UR - https://doi.org/10.1007/978-3-642-10546-3_14 DO - 10.1007/978-3-642-10546-3_14 ID - Mortensen2009 ER -