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Table 1 Exon deletion candidates identified by window length, and comparison with other CNV tools using breast cancer cell lines

From: Detection of internal exon deletion with exon Del

Deletion window length

1

2

3

4

5

6

7

8

9

Exon Deletions1

13720

163

23

11

9

8

8

6

6

Verified in RNAseq2

1988

17

7

7

7

6

6

6

6

Found by CNV Tools3

6099

129

20

11

9

8

8

6

6

  1. 1Based on 16 samples.
  2. 2Based on 13 samples, 3 of the 16 samples did not have RNAseq data.
  3. 3Based on 16 samples.
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BMC Bioinformatics

ISSN: 1471-2105

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