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Table 2 Alignment comparison of Bison with a variety of other aligners on the simulated dataset

From: Bison: bisulfite alignment on nodes of a cluster

Program

Correct

Incorrect

Discarded

Bismark

82.41%

0.44%

17.15%

Bison

90.73% (87.09%)

2.01% (0.02%)

7.25% (12.89%)

BSMAP

89.20% (88.05%)

10.59% (2.53%)

0.21% (9.43%)

BSmooth

90.73% (88.17%)

9.19% (1.12%)

0.07% (10.71%)

BS-Seeker2

88.55%

2.06%

9.39%

GNUMAP-bs

84.64% (79.43%)

3.78% (0.27%)

11.57% (20.29%)

  1. Numbers in parentheses are metrics when only alignments with MAPQ > =10 are included, expect for BSMAP, where they indicate metrics using only uniquely aligned reads (using the "-r 0" option).
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BMC Bioinformatics

ISSN: 1471-2105

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