Table 5 Alignment comparison for the ERR192350 dataset
Program | Nodes (Cores) | Time required (days + hh:mm:ss) | Read pairs/core/sec. | Percent aligned* |
|---|---|---|---|---|
Bismark | 1 (12) | 2 + 14:12:56 | 90.95 | 76.42% |
Bison | 9 (108) | 03:41:07 | 170.61 | 92.41% (72.46%) |
BSMAP | 1 (12) | 04:13:04 | 1341.64 | 83.33% |
BSmooth | 1 (12) | 6 + 06:10:42 | 37.68 | 97.79% (75.28%) |
BS-Seeker2 | 1 (12) | 2 + 21:10:15 | 81.81 | 80.03% |
GNUMAP-bs | 1 (12) | 3 + 04:02:56 | 74.25 | 82.19% (74.66%) |