Table 6 Alignment comparison for the SRR306438 dataset
Program | Nodes (Cores) | Time required (hh:mm:ss) | Read pairs/core/sec. | Percent aligned* |
|---|---|---|---|---|
Bismark | 1 (12) | 03:17:30 | 129.94 | 50.72% |
Bison | 9 (108) | 00:15:50 | 180.09 | 69.32% (57.11%) |
BSMAP | 1 (12) | 00:55:52 | 459.36 | 62.33% |
BSmooth | 1 (12) | 07:23:43 | 57.84 | 75.64% (59.71%) |
BS-Seeker2 | 1 (12) | 06:16:20 | 68.19 | 54.42% |
GNUMAP-bs | 1 (12) | 13:43:30 | 31.16 | 58.54% (53.43%) |