Table 7 Alignment comparison with RRBS dataset ERR034786
Program | Nodes (Cores) | Time required (hh:mm:ss) | Read pairs/core/sec. | Percent aligned* |
|---|---|---|---|---|
Bismark | 1 (12) | 03:25:07 | 104.32 | 58.26% |
Bison | 9 (108) | 00:14:32 | 163.60 | 71.59% (65.94%) |
BSMAP | 1 (12) | 00:22:30 | 951.05 | 65.12% |
BSmooth | 1 (12) | 07:12:01 | 49.53 | 97.40% (68.89%) |
BS-Seeker2 | 1 (12) | 02:50:40 | 125.38 | 32.21% |
GNUMAP-bs | 1 (12) | 05:06:10 | 69.89 | 36.01% (27.74%) |