Skip to main content
Figure 2 | BMC Bioinformatics

Figure 2

From: Systematic exploration of guide-tree topology effects for small protein alignments

Figure 2

Comparison of TC Scores for default and best tree. TC scores for best tree along x-axis, for default tree along y-axis for (a) Clustal Omega, (b) MAFFT FFT-NS-i, (c) MAFFT L-INS-i, (d) MUSCLE. Colour dots are used for individual protein families: Blue and green for high percentage identity reference alignments, yellow and red for low identity. Black box is used for average TC score. Here all points must be below bisectrix as no tree can be better than the best tree.

Back to article page