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Figure 3 | BMC Bioinformatics

Figure 3

From: Systematic exploration of guide-tree topology effects for small protein alignments

Figure 3

Comparison of results for best possible and ML tree. TC scores for the best tree along x-axis, for ML tree along y-axis for (a) Clustal Omega, (b) MAFFT FFT-NS-i, (c) MAFFT L-INS-i, (d) MUSCLE, (e) PAGAN. Colour dots results are used for individual families, black squares averages of families. Bottom right-hand panel distribution of Robinson-Foulds distances between best and ML tree. Frequencies for Clustal Omega (Om) shown in red, MAFFT L-INS-i (Li) in green, MAFFT FFT-NS-i (Ma) in dark blue, MUSCLE (Mu) in magenta and PAGAN (Pa) in light blue.

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