From: Systematic exploration of guide-tree topology effects for small protein alignments
Aligner: | Clustal Omega | MUSCLE | MAFFT | L-INS-i | PAGAN |
---|---|---|---|---|---|
len/a | 0.731 | 0.711 | 0.697 | 0.723 | 0.453 |
len/d | 0.700 | 0.693 | 0.671 | 0.684 | 0.447 |
HM/a | 0.705 | 0.704 | 0.680 | 0.696 | 0.451 |
HM/d | 0.717 | 0.697 | 0.693 | 0.710 | 0.454 |
HML/a | 0.709 | 0.718 | 0.695 | 0.706 | 0.458 |
HML/d | 0.706 | 0.692 | 0.678 | 0.695 | 0.453 |
IP/a | 0.731 | 0.701 | 0.692 | 0.717 | 0.466 |
IP/d | 0.698 | 0.699 | 0.671 | 0.693 | 0.459 |
IPL/a | 0.717 | 0.701 | 0.691 | 0.707 | 0.449 |
IPL/d | 0.705 | 0.704 | 0.683 | 0.705 | 0.454 |
hi/a | 0.685 | 0.685 | 0.649 | 0.674 | 0.423 |
hi/d | 0.745 | 0.731 | 0.724 | 0.742 | 0.483 |
lo/a | 0.654 | 0.641 | 0.598 | 0.614 | 0.397 |
lo/d | 0.730 | 0.722 | 0.717 | 0.729 | 0.461 |
def | 0.757 | 0.722 | 0.718 | 0.754 | NA |
RAxML | 0.743 | 0.731 | 0.718 | 0.740 | 0.532 |