BMC Bioinformatics

Table 2 The normalized values for the six DNA dinucleotide physical structures

From: Sequence-based identification of recombination spots using pseudo nucleic acid representation and recursive feature extraction by linear kernel SVM

Dinucleotide	Physical structures
Dinucleotide	V₁(R_iR_i+1)	V₂(R_iR_i+1)	V₃(R_iR_i+1)	V₄(R_iR_i+1)	V₅(R_iR_i+1)	V₆(R_iR_i+1)
AA	0.06	0.50	0.27	1.59	0.11	−0.11
AC	1.50	0.50	0.80	0.13	1.29	1.04
AG	0.78	0.36	0.09	0.68	−0.24	−0.62
AT	1.07	0.22	0.62	−1.02	2.51	1.17
CA	−1.38	−1.36	−0.27	−0.86	−0.62	−1.25
CC	0.06	1.08	0.09	0.56	−0.82	0.24
CG	−1.66	−1.22	−0.44	−0.82	−0.29	−1.39
CT	0.78	0.36	0.09	0.68	−0.24	−0.62
GA	−0.08	0.50	0.27	0.13	−0.39	0.71
GC	−0.08	0.22	1.33	−0.35	0.65	1.59
GG	0.06	1.08	0.09	0.56	−0.82	0.24
GT	1.50	0.50	0.80	0.13	1.29	1.04
TA	−1.23	−2.37	−0.44	−2.24	−1.51	−1.39
TC	−0.08	0.50	0.27	0.13	−0.39	0.71
TG	−1.38	−1.36	−0.27	−0.86	−0.62	−1.25
TT	0.06	0.50	0.27	1.59	0.11	−0.11

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ISSN: 1471-2105

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