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Table 1 The Pearson correlations between the HSSP S matrix and other matrices estimated by the FastMG procedure

From: FastMG: a simple, fast, and accurate maximum likelihood procedure to estimate amino acid replacement rate matrices from large data sets

Matrices

Frequencies

Exchangeability matrix

HSSP 8 R / HSSP 8 T

0.992/0.986

0.989/0.991

HSSP 16 R / HSSP 16 T

0.996/0.993

0.992/0.996

HSSP 24 R / HSSP 24 T

0.998/0.995

0.994/0.997

HSSP 32 R / HSSP 32 T

0.998/0.997

0.995/0.998

HSSP 64 R / HSSP 64 T

0.999/0.999

0.997/0.999