From: FastMG: a simple, fast, and accurate maximum likelihood procedure to estimate amino acid replacement rate matrices from large data sets
Matrices
Building trees (hours)
Estimating parameters (hours)
Total time (hours)
HSSP 8 R / HSSP 8 T
10.7/7.4
6.3/3.6
17.0/11.0
HSSP 16 R / HSSP 16 T
22.9/19.0
6.0/3.9
28.9/22.9
HSSP 24 R / HSSP 24 T
32.6/29.9
5.7/3.9
38.3/33.8
HSSP 32 R / HSSP 32 T
42.3/40.0
5.5/3.9
47.8/43.9
HSSP 64 R / HSSP 64 T
73.7/71.7
5.2/4.1
78.9/75.8
HSSPS
319.5
4.2
323.7