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Table 4 The Pearson correlations between the Pfam S matrix and other matrices estimated from the FastMG procedure

From: FastMG: a simple, fast, and accurate maximum likelihood procedure to estimate amino acid replacement rate matrices from large data sets

Matrices

Frequencies

Exchangeability matrix

Pfam 8 R / Pfam 8 T

0.994/0.990

0.993/0.993

Pfam 16 R / Pfam 16 T

0.997/0.996

0.995/0.997

Pfam 24 R / Pfam 24 T

0.998/0.999

0.995/0.999

Pfam 32 R / Pfam 32 T

0.999/0.999

0.998/0.999

Pfam 64 R / Pfam 64 T

1.000/1.000

0.999/1.000